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IJKDB
2010
141views more  IJKDB 2010»
15 years 3 months ago
Mining Frequent Boolean Expressions: Application to Gene Expression and Regulatory Modeling
Regulatory network analysis and other bioinformatics tasks require the ability to induce and represent arbitrary boolean expressions from data sources. We introduce a novel framew...
Mohammed Javeed Zaki, Naren Ramakrishnan, Lizhuang...
JMLR
2010
125views more  JMLR 2010»
15 years 1 months ago
On utility of gene set signatures in gene expression-based cancer class prediction
Machine learning methods that can use additional knowledge in their inference process are central to the development of integrative bioinformatics. Inclusion of background knowled...
Minca Mramor, Marko Toplak, Gregor Leban, Tomaz Cu...
PROCEDIA
2010
154views more  PROCEDIA 2010»
15 years 1 months ago
Parallel computation of phylogenetic consensus trees
The field of bioinformatics is witnessing a rapid and overwhelming accumulation of molecular sequence data, predominantly driven by novel wet-lab sequencing techniques. This trend...
Andre J. Aberer, Nicholas D. Pattengale, Alexandro...
TKDE
2010
224views more  TKDE 2010»
15 years 1 months ago
Non-Negative Matrix Factorization for Semisupervised Heterogeneous Data Coclustering
Coclustering heterogeneous data has attracted extensive attention recently due to its high impact on various important applications, such us text mining, image retrieval, and bioin...
Yanhua Chen, Lijun Wang, Ming Dong
SIGMOD
2012
ACM
275views Database» more  SIGMOD 2012»
13 years 9 months ago
Computational reproducibility: state-of-the-art, challenges, and database research opportunities
Computational experiments have become an integral part of the scientific method, but reproducing, archiving, and querying them is still a challenge. The first barrier to a wider...
Juliana Freire, Philippe Bonnet, Dennis Shasha