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BIOINFORMATICS
2005
140views more  BIOINFORMATICS 2005»
15 years 3 months ago
Profile-based direct kernels for remote homology detection and fold recognition
Motivation: Remote homology detection between protein sequences is a central problem in computational biology. Supervised learning algorithms based on support vector machines are ...
Huzefa Rangwala, George Karypis
BIBE
2007
IEEE
148views Bioinformatics» more  BIBE 2007»
15 years 9 months ago
A New Smoothing Model for Analyzing Array CGH Data
—Array based Comparative Genomic Hybridization (CGH) is a molecular cytogenetic method for the detection of chromosomal imbalances and it has been extensively used for studying c...
Nha Nguyen, Heng Huang, Soontorn Oraintara, An P. ...
BIBM
2008
IEEE
107views Bioinformatics» more  BIBM 2008»
15 years 9 months ago
Multiway Clustering for Creating Biomedical Term Sets
We present an EM-based clustering method that can be used for constructing or augmenting ontologies such as MeSH. Our algorithm simultaneously clusters verbs and nouns using both ...
Vasileios Kandylas, Lyle H. Ungar, Ted Sandler, Sh...
BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
15 years 1 months ago
Rex: A toolset for reproducing software experiments
Being able to reproduce experiments is the cornerstone of the scientific method. Software experiments are hard to reproduce even if identical hardware is available because externa...
Somu Perianayagam, Gregory R. Andrews, John H. Har...
FASE
2007
Springer
15 years 9 months ago
Declared Type Generalization Checker: An Eclipse Plug-In for Systematic Programming with More General Types
The Declared Type Generalization Checker is a plug-in for Eclipse’s Java Development Tools (JDT) that supports developers in systematically finding and using better fitting types...
Markus Bach, Florian Forster, Friedrich Steimann