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» Generalization Methods in Bioinformatics
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CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 8 months ago
Islands of Tractability for Parsimony Haplotyping
We study the parsimony approach to haplotype inference, which calls for finding a set of haplotypes of minimum cardinality that explains an input set of genotypes. We prove that ...
Roded Sharan, Bjarni V. Halldórsson, Sorin ...
BIBE
2000
IEEE
113views Bioinformatics» more  BIBE 2000»
15 years 7 months ago
Calcium Homeostasis: A Feedback Control Point of View
In the biological sciences, the mathematical approach to studying feedbackmechanisms has not been common despite the abundance of such mechanismsin those systems. In this paper, w...
Hana El-Samad, Mustafa Khammash
BIBM
2007
IEEE
149views Bioinformatics» more  BIBM 2007»
15 years 7 months ago
An Algorithm for Assigning Unique Keys to Metabolic Pathways
Different databases of metabolic pathways assign pathways different keys. For this reason, it is difficult to automatically compare pathways across databases. We introduce an algo...
Fang Fang, Robert L. Grossman, Xiangjun Liu
KDD
2008
ACM
115views Data Mining» more  KDD 2008»
16 years 3 months ago
SPIRAL: efficient and exact model identification for hidden Markov models
Hidden Markov models (HMMs) have received considerable attention in various communities (e.g, speech recognition, neurology and bioinformatic) since many applications that use HMM...
Yasuhiro Fujiwara, Yasushi Sakurai, Masashi Yamamu...
WABI
2009
Springer
109views Bioinformatics» more  WABI 2009»
15 years 9 months ago
Fast Prediction of RNA-RNA Interaction
Regulatory antisense RNAs are a class of ncRNAs that regulate gene expression by prohibiting the translation of an mRNA by establishing stable interactions with a target sequence. ...
Raheleh Salari, Rolf Backofen, Süleyman Cenk ...