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BIOINFORMATICS
2006
124views more  BIOINFORMATICS 2006»
15 years 3 months ago
Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins
Motivation: In many proteins, helix-helix interactions can be critical to establishing protein conformation (folding) and dynamics, as well as determining associations between pro...
Anne E. Counterman Burba, Ursula Lehnert, Eric Z. ...
BIOINFORMATICS
2005
85views more  BIOINFORMATICS 2005»
15 years 3 months ago
An automated genotyping system for analysis of HIV-1 and other microbial sequences
Motivation: Genetic analysis of HIV-1 is important not only for vaccine development, but also to guide treatment strategies, track the emergence of new viral variants and ensure t...
Tulio de Oliveira, Koen Deforche, Sharon Cassol, M...
BIOINFORMATICS
2005
71views more  BIOINFORMATICS 2005»
15 years 3 months ago
Semi-supervised protein classification using cluster kernels
A key issue in supervised protein classification is the representation of input sequences of amino acids. Recent work using string kernels for protein data has achieved state-of-t...
Jason Weston, Christina S. Leslie, Eugene Ie, Deng...
BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
15 years 3 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...
BIOINFORMATICS
2000
74views more  BIOINFORMATICS 2000»
15 years 3 months ago
Net Nearest Neighbor Analysis (NNNA) summarizes non-compensated dinucleotides within gene sequences
Motivation: Net Nearest Neighbor Analysis (NNNA) measures a previously unexamined aspect of dinucleotide frequency--the non-compensated, non-repetitive dinucleotides in a sequence...
Dorothy M. Lang