We introduce a new combinatorial optimization problem, which is a generalization of the Traveling Salesman Problem (TSP) and which we call Traveling Salesman Problem of Second Orde...
Prediction of gene functions is a major challenge to biologists in the post-genomic era. Interactions between genes and their products compose networks and can be used to infer ge...
The ability to measure bacterial diversity is a prerequisite for the systematic study of bacterial biogeography and ecology. In this paper we describe a method of estimating divers...
One of the major problems in biological data integration is that many data sources are stored as flat-files, with a variety of different layouts. Integrating data from such sour...
Kaushik Sinha, Xuan Zhang, Ruoming Jin, Gagan Agra...
Annotation of protein function often arises in the context of partially complete genomes but is not adequately addressed. We present an annotation method by extracting ortholog cl...
Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muc...