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RECOMB
2006
Springer
15 years 10 months ago
Markov Additive Chains and Applications to Fragment Statistics for Peptide Mass Fingerprinting
Abstract. Peptide mass fingerprinting is a technique to identify a protein from its fragment masses obtained by mass spectrometry after enzymatic digestion. Recently, much attentio...
Hans-Michael Kaltenbach, Sebastian Böcker, Sv...
RECOMB
2004
Springer
15 years 10 months ago
Computational identification of evolutionarily conserved exons
Phylogenetic hidden Markov models (phylo-HMMs) have recently been proposed as a means for addressing a multispecies version of the ab initio gene prediction problem. These models ...
Adam C. Siepel, David Haussler
JCB
2000
91views more  JCB 2000»
14 years 9 months ago
Scaling Laws and Similarity Detection in Sequence Alignment with Gaps
We study the problem of similarity detection by sequence alignment with gaps, using a recently established theoretical framework based on the morphology of alignment paths. Alignm...
Dirk Drasdo, Terence Hwa, Michael Lässig
ICMCS
2006
IEEE
139views Multimedia» more  ICMCS 2006»
15 years 3 months ago
Automatic Semantic Annotation of Images using Spatial Hidden Markov Model
This paper presents a new spatial-HMM(SHMM)for automatically classifying and annotating natural images. Our model is a 2D generalization of the traditional HMM in the sense that b...
Feiyang Yu, Horace Ho-Shing Ip
SC
2005
ACM
15 years 3 months ago
ClawHMMER: A Streaming HMMer-Search Implementation
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...
Daniel Reiter Horn, Mike Houston, Pat Hanrahan