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RECOMB
2002
Springer
15 years 10 months ago
DNA sequence evolution with neighbor-dependent mutation
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this c...
Peter F. Arndt, Christopher B. Burge, Terence Hwa
TNN
1998
123views more  TNN 1998»
14 years 9 months ago
A general framework for adaptive processing of data structures
—A structured organization of information is typically required by symbolic processing. On the other hand, most connectionist models assume that data are organized according to r...
Paolo Frasconi, Marco Gori, Alessandro Sperduti
RECOMB
2009
Springer
15 years 4 months ago
Counting All DCJ Sorting Scenarios
In genome rearrangements, the double cut and join (DCJ) operation, introduced by Yancopoulos et al., allows to represent most rearrangement events that could happen in multichromos...
Marília D. V. Braga, Jens Stoye
VLDB
2004
ACM
99views Database» more  VLDB 2004»
15 years 3 months ago
Query Languages and Data Models for Database Sequences and Data Streams
We study the fundamental limitations of relational algebra (RA) and SQL in supporting sequence and stream queries, and present effective query language and data model enrichments ...
Yan-Nei Law, Haixun Wang, Carlo Zaniolo
INFOCOM
2006
IEEE
15 years 4 months ago
A Quasi-Species Approach for Modeling the Dynamics of Polymorphic Worms
— Polymorphic worms can change their byte sequence as they replicate and propagate, thwarting the traditional signature analysis techniques used by many intrusion detection syste...
Bradley Stephenson, Biplab Sikdar