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ISMB
1997
14 years 11 months ago
Functional Prediction of B. subtilis Genes from Their Regulatory Sequences
In bacterial cells, gene expression is regulated by multiple sigma factors, each of which has its promoter specificity, according to their conditions. Thus, if we can discriminate...
Tetsushi Yada, Yasushi Totoki, Takahiro Ishii, Ken...
AIIA
2007
Springer
15 years 4 months ago
Structured Hidden Markov Model: A General Framework for Modeling Complex Sequences
Structured Hidden Markov Model (S-HMM) is a variant of Hierarchical Hidden Markov Model that shows interesting capabilities of extracting knowledge from symbolic sequences. In fact...
Ugo Galassi, Attilio Giordana, Lorenza Saitta
IDA
2006
Springer
14 years 9 months ago
Structural hidden Markov models: An application to handwritten numeral recognition
We introduce in this paper a generalization of the widely used hidden Markov models (HMM's), which we name "structural hidden Markov models" (SHMM). Our approach is ...
Djamel Bouchaffra, Jun Tan
RECOMB
2001
Springer
15 years 10 months ago
Applications of generalized pair hidden Markov models to alignment and gene finding problems
Hidden Markov models (HMMs) have been successfully applied to a variety of problems in molecular biology, ranging from alignment problems to gene nding and annotation. Alignment p...
Lior Pachter, Marina Alexandersson, Simon Cawley
ECAI
2004
Springer
15 years 3 months ago
Learning Complex and Sparse Events in Long Sequences
The Hierarchical Hidden Markov Model (HHMM) is a well formalized tool suitable to model complex patterns in long temporal or spatial sequences. Even if effective algorithms are ava...
Marco Botta, Ugo Galassi, Attilio Giordana