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ISMB
1996
14 years 11 months ago
Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model
We have developed a hidden Markov model (HMM)to detect the protein coding regions within one megabase contiguous sequence data, registered in a database called GenBankin eight ent...
Tetsushi Yada, Makoto Hirosawa
CSDA
2007
116views more  CSDA 2007»
14 years 9 months ago
Exploring the state sequence space for hidden Markov and semi-Markov chains
The knowledge of the state sequences that explain a given observed sequence for a known hidden Markovian model is the basis of various methods that may be divided into three categ...
Yann Guédon
BMCBI
2006
160views more  BMCBI 2006»
14 years 10 months ago
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Background: In order to improve gene prediction, extrinsic evidence on the gene structure can be collected from various sources of information such as genome-genome comparisons an...
Mario Stanke, Oliver Schöffmann, Burkhard Mor...
PE
2010
Springer
138views Optimization» more  PE 2010»
14 years 8 months ago
Trace data characterization and fitting for Markov modeling
We propose a trace fitting algorithm for Markovian Arrival Processes (MAPs) that can capture statistics of any order of interarrival times between measured events. By studying re...
Giuliano Casale, Eddy Z. Zhang, Evgenia Smirni
ICDM
2007
IEEE
131views Data Mining» more  ICDM 2007»
15 years 4 months ago
Characterizing RNA Secondary-Structure Features and Their Effects on Splice-Site Prediction
— RNA molecules are distinguished by their sequence composition and by their three-dimensional shape, called the secondary structure. The secondary structure of a pre-mRNA sequen...
Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur