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IPPS
2010
IEEE
14 years 7 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
IJFCS
2006
63views more  IJFCS 2006»
14 years 10 months ago
Critical Path Scheduling Parallel Programs on an Unbounded Number of Processors
In this paper we present an efficient algorithm for compile-time scheduling and clustering of parallel programs onto parallel processing systems with distributed memory, which is ...
Mourad Hakem, Franck Butelle
CCGRID
2009
IEEE
15 years 4 months ago
BLAST Application with Data-Aware Desktop Grid Middleware
—There exists numerous Grid middleware to develop and execute programs on the computational Grid, but they still require intensive work from their users. BitDew is made to facili...
Haiwu He, Gilles Fedak, Bing Tang, Franck Cappello
SC
1991
ACM
15 years 1 months ago
Interprocedural transformations for parallel code generation
We present a new approach that enables compiler optimization of procedure calls and loop nests containing procedure calls. We introduce two interprocedural transformationsthat mov...
Mary W. Hall, Ken Kennedy, Kathryn S. McKinley
CCGRID
2006
IEEE
15 years 4 months ago
Statistical Properties of Task Running Times in a Global-Scale Grid Environment
— Over the years, the use of global grid environments have become widespread. In order to make applications robust against the dynamics of those grid environments it is essential...
Menno Dobber, Robert D. van der Mei, Ger Koole