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BMCBI
2006
106views more  BMCBI 2006»
14 years 11 months ago
Gene and protein nomenclature in public databases
Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
Katrin Fundel, Ralf Zimmer
114
Voted
KDD
2007
ACM
154views Data Mining» more  KDD 2007»
15 years 11 months ago
Canonicalization of database records using adaptive similarity measures
It is becoming increasingly common to construct databases from information automatically culled from many heterogeneous sources. For example, a research publication database can b...
Aron Culotta, Michael L. Wick, Robert Hall, Matthe...
BMCBI
2010
129views more  BMCBI 2010»
14 years 11 months ago
Geoseq: a tool for dissecting deep-sequencing datasets
Background: Datasets generated on deep-sequencing platforms have been deposited in various public repositories such as the Gene Expression Omnibus (GEO), Sequence Read Archive (SR...
James Gurtowski, Anthony Cancio, Hardik Shah, Chay...
DEBU
2007
211views more  DEBU 2007»
14 years 10 months ago
Provenance in Databases: Past, Current, and Future
The need to understand and manage provenance arises in almost every scientific application. In many cases, information about provenance constitutes the proof of correctness of re...
Wang Chiew Tan
CSB
2003
IEEE
111views Bioinformatics» more  CSB 2003»
15 years 4 months ago
A Contradiction-Based Framework for Testing Gene Regulation Hypotheses
We have developed a mathematical framework for representing and testing hypotheses about gene, protein, and signaling molecule interactions. It takes a hierarchical, contradiction...
Steve Racunas, Nigam Shah, Nina V. Fedoroff