Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
It is becoming increasingly common to construct databases from information automatically culled from many heterogeneous sources. For example, a research publication database can b...
Aron Culotta, Michael L. Wick, Robert Hall, Matthe...
Background: Datasets generated on deep-sequencing platforms have been deposited in various public repositories such as the Gene Expression Omnibus (GEO), Sequence Read Archive (SR...
James Gurtowski, Anthony Cancio, Hardik Shah, Chay...
The need to understand and manage provenance arises in almost every scientific application. In many cases, information about provenance constitutes the proof of correctness of re...
We have developed a mathematical framework for representing and testing hypotheses about gene, protein, and signaling molecule interactions. It takes a hierarchical, contradiction...