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» Genetic Algorithms for Component Analysis
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WABI
2005
Springer
110views Bioinformatics» more  WABI 2005»
15 years 9 months ago
Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)
Abstract. Traditional sequence comparison by alignment applies a mutation model comprising two events, substitutions and indels (insertions or deletions) of single positions (SI). ...
Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens...
CIKM
2004
Springer
15 years 9 months ago
Scalable sequential pattern mining for biological sequences
Biosequences typically have a small alphabet, a long length, and patterns containing gaps (i.e., “don’t care”) of arbitrary size. Mining frequent patterns in such sequences ...
Ke Wang, Yabo Xu, Jeffrey Xu Yu
CIKM
2005
Springer
15 years 9 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
GECCO
2008
Springer
108views Optimization» more  GECCO 2008»
15 years 5 months ago
The effects of mutation and directed intervention crossover when applied to scheduling chemotherapy
This paper discusses the effects of mutation and directed intervention crossover approaches when applied to the derivation of cancer chemotherapy treatment schedules. Unlike trad...
Paul M. Godley, David E. Cairns, Julie Cowie, Kevi...
FOGA
2011
14 years 7 months ago
On the movement of vertex fixed points in the simple GA
The Vose dynamical system model of the simple genetic algorithm models the behavior of this algorithm for large population sizes and is the basis of the exact Markov chain model. ...
Alden H. Wright, Tomás Gedeon, J. Neal Rich...