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» Genetic Algorithms for Dynamic Test Data Generation
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WEBI
2010
Springer
14 years 7 months ago
A Scalable Indexing Mechanism for Ontology-Based Information Integration
In recent years, there has been an explosion of publicly available RDF and OWL web pages. Some of these pages are static text files, while others are dynamically generated from la...
Yingjie Li, Abir Qasem, Jeff Heflin
BMCBI
2006
137views more  BMCBI 2006»
14 years 9 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan
JAR
2000
145views more  JAR 2000»
14 years 9 months ago
Logical Cryptanalysis as a SAT Problem
Cryptographic algorithms play a key role in computer security and the formal analysis of their robustness is of utmost importance. Yet, logic and automated reasoning tools are seld...
Fabio Massacci, Laura Marraro
BMCBI
2008
211views more  BMCBI 2008»
14 years 9 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
ISMB
2000
14 years 11 months ago
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu,...