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BMCBI
2010
153views more  BMCBI 2010»
14 years 9 months ago
MimoSA: a system for minimotif annotation
Background: Minimotifs are short peptide sequences within one protein, which are recognized by other proteins or molecules. While there are now several minimotif databases, they a...
Jay Vyas, Ronald J. Nowling, Thomas Meusburger, Da...
87
Voted
PLDI
2004
ACM
15 years 3 months ago
Jedd: a BDD-based relational extension of Java
In this paper we present Jedd, a language extension to Java that supports a convenient way of programming with Binary Decision Diagrams (BDDs). The Jedd language abstracts BDDs as...
Ondrej Lhoták, Laurie J. Hendren
BMCBI
2008
83views more  BMCBI 2008»
14 years 9 months ago
A Java-based tool for the design of classification microarrays
Background: Classification microarrays are used for purposes such as identifying strains of bacteria and determining genetic relationships to understand the epidemiology of an inf...
Da Meng, Shira L. Broschat, Douglas R. Call
BMCBI
2006
109views more  BMCBI 2006»
14 years 9 months ago
Integrated analysis of gene expression by association rules discovery
Background: Microarray technology is generating huge amounts of data about the expression level of thousands of genes, or even whole genomes, across different experimental conditi...
Pedro Carmona-Saez, Monica Chagoyen, Andrés...
IDA
2008
Springer
14 years 9 months ago
ExpertDiscovery system application for the hierarchical analysis of eukaryotic transcription regulatory regions based on DNA cod
We developed Relational Data Mining approach which allows to overcome essential limitations of the Data Mining and Knowledge Discovery techniques. In the paper the approach was im...
I. V. Khomicheva, Eugenii E. Vityaev, Elena A. Ana...