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» Genetic algorithms using low-discrepancy sequences
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BMCBI
2010
148views more  BMCBI 2010»
15 years 3 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
ICAI
2003
15 years 4 months ago
Mining Generalized Sequential Patterns Using Genetic Programming
We propose a new kind of sequential pattern which we call Generalized Sequential Pattern, and we introduce the problem of mining generalized sequential patterns over temporal datab...
Sandra de Amo, Ary dos Santos Rocha Jr.
LCTRTS
2010
Springer
15 years 1 months ago
Improving both the performance benefits and speed of optimization phase sequence searches
The issues of compiler optimization phase ordering and selection present important challenges to compiler developers in several domains, and in particular to the speed, code size,...
Prasad A. Kulkarni, Michael R. Jantz, David B. Wha...
BMCBI
2007
117views more  BMCBI 2007»
15 years 3 months ago
DNA-based watermarks using the DNA-Crypt algorithm
Background: The aim of this paper is to demonstrate the application of watermarks based on DNA sequences to identify the unauthorized use of genetically modified organisms (GMOs) ...
Dominik Heider, Angelika Barnekow
125
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CIKM
2005
Springer
15 years 8 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...