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» Genetic algorithms using low-discrepancy sequences
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127
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BMCBI
2007
108views more  BMCBI 2007»
15 years 3 months ago
Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants
Background: Single nucleotide polymorphisms (SNPs) and genes that exhibit presence/absence variation have provided informative marker sets for bacterial and viral genotyping. Iden...
Erin P. Price, John Inman-Bamber, Venugopal Thiruv...
157
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BMCBI
2005
130views more  BMCBI 2005»
15 years 3 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
138
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RECOMB
2004
Springer
16 years 3 months ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
120
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GECCO
2003
Springer
100views Optimization» more  GECCO 2003»
15 years 8 months ago
Studying the Advantages of a Messy Evolutionary Algorithm for Natural Language Tagging
The process of labeling each word in a sentence with one of its lexical categories (noun, verb, etc) is called tagging and is a key step in parsing and many other language processi...
Lourdes Araujo
EVOW
2004
Springer
15 years 9 months ago
Two-Step Genetic Programming for Optimization of RNA Common-Structure
We present an algorithm for identifying putative non-coding RNA (ncRNA) using an RCSG (RNA Common-Structural Grammar) and show the effectiveness of the algorithm. The algorithm con...
Jin-Wu Nam, Je-Gun Joung, Y. S. Ahn, Byoung-Tak Zh...