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BMCBI
2002
126views more  BMCBI 2002»
14 years 9 months ago
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
Christian M. Zmasek, Sean R. Eddy
NAR
2011
215views Computer Vision» more  NAR 2011»
14 years 13 days ago
LSD: a leaf senescence database
By broad literature survey, we have developed a leaf senescence database (LSD, http://www .eplantsenescence.org/) that contains a total of 1145 senescence associated genes (SAGs) ...
Xiao-Chuan Liu, Zhonghai Li, Zhiqiang Jiang, Yi Zh...
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BMCBI
2010
179views more  BMCBI 2010»
14 years 9 months ago
A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties
Background: Genetic interaction profiles are highly informative and helpful for understanding the functional linkages between genes, and therefore have been extensively exploited ...
Zhuhong You, Zheng Yin, Kyungsook Han, De-Shuang H...
BMCBI
2006
137views more  BMCBI 2006»
14 years 9 months ago
INTEGRATOR: interactive graphical search of large protein interactomes over the Web
Background: The rapid growth of protein interactome data has elevated the necessity and importance of network analysis tools. However, unlike pure text data, network search spaces...
Aaron N. Chang, Jason McDermott, Zachary Frazier, ...
BMCBI
2006
172views more  BMCBI 2006»
14 years 9 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...