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» Genome Rearrangement in Mitochondria and Its Computational B...
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NAR
2011
208views Computer Vision» more  NAR 2011»
14 years 4 months ago
The Pancreatic Expression database: 2011 update
The Pancreatic Expression database (PED, http:// www.pancreasexpression.org) has established itself as the main repository for pancreatic-derived -omics data. For the past 3 years...
Rosalind J. Cutts, Emanuela Gadaleta, Stephan A. H...
ISAAC
2004
Springer
106views Algorithms» more  ISAAC 2004»
15 years 3 months ago
Minimum Common String Partition Problem: Hardness and Approximations
String comparison is a fundamental problem in computer science, with applications in areas such as computational biology, text processing or compression. In this paper we address t...
Avraham Goldstein, Petr Kolman, Jie Zheng
BMCBI
2005
161views more  BMCBI 2005»
14 years 9 months ago
Non-linear mapping for exploratory data analysis in functional genomics
Background: Several supervised and unsupervised learning tools are available to classify functional genomics data. However, relatively less attention has been given to exploratory...
Francisco Azuaje, Haiying Wang, Alban Chesneau
IPPS
2003
IEEE
15 years 2 months ago
Parallel Detection of Regulatory Elements with gMP
The detection of regulatory elements from a large set of regulatory regions is a challenging problem in computational genomics. However, computational methods to extract this biol...
Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Sant...
RECOMB
2006
Springer
15 years 10 months ago
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes
Abstract. Transcriptional interactions in a cell are modulated by a variety of mechanisms that prevent their representation as pure pairwise interactions between a transcription fa...
Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam ...