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BMCBI
2006
143views more  BMCBI 2006»
14 years 9 months ago
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
Background: The estimation of the difference between two evolutionary distances within a triplet of homologs is a common operation that is used for example to determine which of t...
Christophe Dessimoz, Manuel Gil, Adrian Schneider,...
BMCBI
2008
128views more  BMCBI 2008»
14 years 9 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
BMCBI
2007
153views more  BMCBI 2007»
14 years 9 months ago
MPHASYS: a mouse phenotype analysis system
Background: Systematic, high-throughput studies of mouse phenotypes have been hampered by the inability to analyze individual animal data from a multitude of sources in an integra...
R. Brent Calder, Rudolf B. Beems, Harry van Steeg,...
ISPA
2005
Springer
15 years 3 months ago
COMPACT: A Comparative Package for Clustering Assessment
Abstract. There exist numerous algorithms that cluster data-points from largescale genomic experiments such as sequencing, gene-expression and proteomics. Such algorithms may emplo...
Roy Varshavsky, Michal Linial, David Horn
INFORMS
2010
107views more  INFORMS 2010»
14 years 8 months ago
A Class Representative Model for Pure Parsimony Haplotyping
Haplotyping estimation from aligned Single Nucleotide Polymorphism (SNP) fragments has attracted more and more attention in the recent years due to its importance in analysis of m...
Daniele Catanzaro, Alessandra Godi, Martine Labb&e...