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BMCBI
2007
94views more  BMCBI 2007»
14 years 9 months ago
Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context
Background: Lightweight genome viewer (lwgv) is a web-based tool for visualization of sequence annotations in their chromosomal context. It performs most of the functions of large...
Jeremiah J. Faith, Andrew J. Olson, Timothy S. Gar...
RECOMB
2000
Springer
15 years 1 months ago
A compression algorithm for DNA sequences and its applications in genome comparison
We present a lossless compression algorithm, GenCompress, for genetic sequences, based on searching for approximate repeats. Our algorithm achieves the best compression ratios for...
Xin Chen, Sam Kwong, Ming Li
RECOMB
2005
Springer
15 years 10 months ago
Individual Gene Cluster Statistics in Noisy Maps
Abstract. Identification of homologous chromosomal regions is important for understanding evolutionary processes that shape genome evolution, such as genome rearrangements and larg...
Narayanan Raghupathy, Dannie Durand
EVOW
2008
Springer
14 years 11 months ago
Reactive Stochastic Local Search Algorithms for the Genomic Median Problem
Abstract. The genomic median problem is an optimization problem inspired by a biological issue: it aims at finding the chromosome organization of the common ancestor to multiple li...
Renaud Lenne, Christine Solnon, Thomas Stützl...
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BMCBI
2011
14 years 4 months ago
Outer membrane proteins can be simply identified using secondary structure element alignment
Background: Outer membrane proteins (OMPs) are frequently found in the outer membranes of gram-negative bacteria, mitochondria and chloroplasts and have been found to play diverse...
Ren-Xiang Yan, Zhen Chen, Ziding Zhang