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» Genome rearrangements with duplications
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NAR
2002
80views more  NAR 2002»
14 years 9 months ago
Wanda: a database of duplicated fish genes
Comparative genomics has shown that ray-finned fish (Actinopterygii) contain more copies of many genes than other vertebrates. A large number of these additional genes appear to h...
Yves Van de Peer, John Shawe-Taylor, Jayabalan Jos...
JCB
2006
124views more  JCB 2006»
14 years 10 months ago
The Distribution of Genomic Distance between Random Genomes
We study the probability distribution of genomic distance d under the hypothesis of random gene order. We translate the random order assumption into a stochastic method for constr...
David Sankoff, Lani Haque
BIOINFORMATICS
2011
14 years 5 months ago
Algorithms for sorting unsigned linear genomes by the DCJ operations
Motivation: The double cut and join operation (abbreviated as DCJ) has been extensively used for genomic rearrangement. Although the DCJ distance between signed genomes with both ...
Haitao Jiang, Binhai Zhu, Daming Zhu
RECOMB
2004
Springer
15 years 10 months ago
The Statistical Significance of Max-Gap Clusters
Identifying gene clusters, genomic regions that share local similarities in gene organization, is a prerequisite for many different types of genomic analyses, including operon pred...
Rose Hoberman, David Sankoff, Dannie Durand
BMCBI
2010
100views more  BMCBI 2010»
14 years 10 months ago
Scaffold filling, contig fusion and comparative gene order inference
Background: There has been a trend in increasing the phylogenetic scope of genome sequencing without finishing the sequence of the genome. Increasing numbers of genomes are being ...
Adriana Muñoz, Chunfang Zheng, Qian Zhu, Vi...