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» Genome rearrangements with duplications
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WABI
2005
Springer
132views Bioinformatics» more  WABI 2005»
15 years 3 months ago
Perfect Sorting by Reversals Is Not Always Difficult
—We propose new algorithms for computing pairwise rearrangement scenarios that conserve the combinatorial structure of genomes. More precisely, we investigate the problem of sort...
Sèverine Bérard, Anne Bergeron, Cedr...
COCOON
2005
Springer
15 years 3 months ago
Conserved Interval Distance Computation Between Non-trivial Genomes
Recently, several studies taking into account the ability for a gene to be absent or to have some copies in genomes have been proposed, as the examplar distance [11, 6] or the gene...
Guillaume Blin, Romeo Rizzi
WABI
2005
Springer
110views Bioinformatics» more  WABI 2005»
15 years 3 months ago
Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)
Abstract. Traditional sequence comparison by alignment applies a mutation model comprising two events, substitutions and indels (insertions or deletions) of single positions (SI). ...
Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens...
BIOCOMP
2007
14 years 11 months ago
Towards Phylogenomic Reconstruction
Reconstructing phylogenies is one of the primary objectives in evolution studies. Efficient software to reconstruct phylogenies based on isolated genes has existed for decades, ye...
Le Vinh, Andres Varon, Daniel Janies, Ward Wheeler
BIBE
2007
IEEE
127views Bioinformatics» more  BIBE 2007»
15 years 4 months ago
A Heuristic for Phylogenetic Reconstruction Using Transposition
Abstract—Because of the advent of high-throughput sequencing and the consequent reduction in cost of sequencing, many organisms have been completely sequenced and most of their g...
Feng Yue, Meng Zhang, Jijun Tang