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    » Genomic analysis of gene regulation complexity
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    RECOMB
    2005
    Springer
    110views Computational Biology» more  RECOMB 2005»
    RNA-RNA Interaction Prediction and Antisense RNA Target Search
    15 years 10 months ago
    RNA-RNA Interaction Prediction and Antisense RNA Target Search
    Download  compbio.cs.sfu.ca
    Abstract. Recent studies demonstrating the existence of special non-coding "antisense" RNAs used in post-transcriptional gene regulation have received considerable attent...
    Can Alkan, Emre Karakoç, Joseph H. Nadeau, ...
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    BMCBI
    2007
    146views more  BMCBI 2007»
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    14 years 10 months ago
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    Download  www.biomedcentral.com
    Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
    Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
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    BMCBI
    2010
    90views more  BMCBI 2010»
    PuTmiR: A database for extracting neighboring transcription factors of human microRNAs
    14 years 10 months ago
    PuTmiR: A database for extracting neighboring transcription factors of human microRNAs
    Download  www.biomedcentral.com
    Background: Some of the recent investigations in systems biology have revealed the existence of a complex regulatory network between genes, microRNAs (miRNAs) and transcription fa...
    Sanghamitra Bandyopadhyay, Malay Bhattacharyya
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    BMCBI
    2005
    134views more  BMCBI 2005»
    Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists
    14 years 10 months ago
    Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists
    Download  www.biomedcentral.com
    Background: Analysis of inherited diseases and their associated phenotypes is of great importance to gain knowledge of underlying genetic interactions and could ultimately give cl...
    Marco Masseroli, Osvaldo Galati, Mauro Manzotti, K...
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    BMCBI
    2007
    182views more  BMCBI 2007»
    Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data
    14 years 10 months ago
    Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data
    Download  www.biomedcentral.com
    Background: ChIP-chip data, which indicate binding of transcription factors (TFs) to DNA regions in vivo, are widely used to reconstruct transcriptional regulatory networks. Howev...
    Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen
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