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» Geometric Pattern Matching: A Performance Study
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KDD
2005
ACM
137views Data Mining» more  KDD 2005»
16 years 5 months ago
Pattern-based similarity search for microarray data
One fundamental task in near-neighbor search as well as other similarity matching efforts is to find a distance function that can efficiently quantify the similarity between two o...
Haixun Wang, Jian Pei, Philip S. Yu
CIKM
2005
Springer
15 years 10 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
INFSOF
2007
83views more  INFSOF 2007»
15 years 4 months ago
On the design of more secure software-intensive systems by use of attack patterns
Retrofitting security implementations to a released software-intensive system or to a system under development may require significant architectural or coding changes. These late...
Michael Gegick, Laurie Williams
CBMS
2006
IEEE
15 years 10 months ago
MS2DB: An Algorithmic Approach to Determine Disulfide Linkage Patterns
Determining the number and location of disulfide bonds within a protein provide valuable insight into the protein’s three-dimensional structure. Purely computational methods tha...
Timothy Lee, Rahul Singh, Ten-Yang Yen, Bruce Mach...
PRL
2011
14 years 7 months ago
Structural matching of 2D electrophoresis gels using deformed graphs
2D electrophoresis is a well known method for protein separation which is extremely useful in the field of proteomics. Each spot in the image represents a protein accumulation an...
Alexandre Noma, Alvaro Pardo, Roberto Marcondes Ce...