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GCB
2009
Springer
105views Biometrics» more  GCB 2009»
16 years 21 days ago
Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search
: Genome annotation relies to a large extent on the recognition of homologs to already known genes. The starting point for such protocols is a collection of known sequences from on...
Peter Menzel, Jan Gorodkin, Peter F. Stadler
165
Voted
ASAP
2008
IEEE
186views Hardware» more  ASAP 2008»
16 years 19 days ago
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs
RNA structure prediction, or folding, is a computeintensive task that lies at the core of several search applications in bioinformatics. We begin to address the need for high-thro...
Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberla...
154
Voted
DIS
2007
Springer
16 years 9 days ago
Literature Based Discovery Support System and Its Application to Disease Gene Identification
We present an interactive discovery support system, which for a given starting concept of interest, discovers new, potentially meaningful relations with other concepts that have no...
Dimitar Hristovski, Borut Peterlin, Saso Dzeroski,...
147
Voted
WABI
2007
Springer
123views Bioinformatics» more  WABI 2007»
16 years 7 days ago
Inverse Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...
Eagu Kim, John D. Kececioglu
140
Voted
WABI
2007
Springer
121views Bioinformatics» more  WABI 2007»
16 years 7 days ago
Seeded Tree Alignment and Planar Tanglegram Layout
The optimal transformation of one tree into another by means of elementary edit operations is an important algorithmic problem that has several interesting applications to computat...
Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabr...