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BMCBI
2008
95views more  BMCBI 2008»
14 years 11 months ago
Gene set analyses for interpreting microarray experiments on prokaryotic organisms
Background: Despite the widespread usage of DNA microarrays, questions remain about how best to interpret the wealth of gene-by-gene transcriptional levels that they measure. Rece...
Nathan L. Tintle, Aaron A. Best, Matthew DeJongh, ...
BMCBI
2005
92views more  BMCBI 2005»
14 years 11 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay
CIKM
2008
Springer
15 years 1 months ago
Modeling hidden topics on document manifold
Topic modeling has been a key problem for document analysis. One of the canonical approaches for topic modeling is Probabilistic Latent Semantic Indexing, which maximizes the join...
Deng Cai, Qiaozhu Mei, Jiawei Han, Chengxiang Zhai
BMCBI
2008
120views more  BMCBI 2008»
14 years 11 months ago
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
Background: The Codon Adaptation Index (CAI) is a measure of the synonymous codon usage bias for a DNA or RNA sequence. It quantifies the similarity between the synonymous codon u...
Pere Puigbò, Ignacio G. Bravo, Santiago Gar...
CADE
2004
Springer
15 years 12 months ago
The ICS Decision Procedures for Embedded Deduction
contexts such as construction of abstractions, speed may be favored over completeness, so that undecidable theories (e.g., nonlinear integer arithmetic) and those whose decision pr...
Leonardo Mendonça de Moura, Sam Owre, Haral...