Background: Despite the widespread usage of DNA microarrays, questions remain about how best to interpret the wealth of gene-by-gene transcriptional levels that they measure. Rece...
Nathan L. Tintle, Aaron A. Best, Matthew DeJongh, ...
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
Topic modeling has been a key problem for document analysis. One of the canonical approaches for topic modeling is Probabilistic Latent Semantic Indexing, which maximizes the join...
Deng Cai, Qiaozhu Mei, Jiawei Han, Chengxiang Zhai
Background: The Codon Adaptation Index (CAI) is a measure of the synonymous codon usage bias for a DNA or RNA sequence. It quantifies the similarity between the synonymous codon u...
contexts such as construction of abstractions, speed may be favored over completeness, so that undecidable theories (e.g., nonlinear integer arithmetic) and those whose decision pr...