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» Graph Comparison Using Fine Structure Analysis
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PRIB
2009
Springer
100views Bioinformatics» more  PRIB 2009»
15 years 4 months ago
Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data
Abstract. The rapidly emerging field of metagenomics seeks to examine the genomic content of communities of organisms to understand their roles and interactions in an ecosystem. I...
Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, E...
BMCBI
2007
131views more  BMCBI 2007»
14 years 10 months ago
FUNC: a package for detecting significant associations between gene sets and ontological annotations
Background: Genome-wide expression, sequence and association studies typically yield large sets of gene candidates, which must then be further analysed and interpreted. Informatio...
Kay Prüfer, Bjoern Muetzel, Hong Hai Do, Gunt...
TACAS
2007
Springer
131views Algorithms» more  TACAS 2007»
15 years 4 months ago
From Time Petri Nets to Timed Automata: An Untimed Approach
Abstract. Time Petri Nets (TPN) and Timed Automata (TA) are widely-used formalisms for the modeling and analysis of timed systems. A recently-developed approach for the analysis of...
Davide D'Aprile, Susanna Donatelli, Arnaud Sangnie...
BMCBI
2005
147views more  BMCBI 2005»
14 years 9 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
SDM
2007
SIAM
177views Data Mining» more  SDM 2007»
14 years 11 months ago
Multi-way Clustering on Relation Graphs
A number of real-world domains such as social networks and e-commerce involve heterogeneous data that describes relations between multiple classes of entities. Understanding the n...
Arindam Banerjee, Sugato Basu, Srujana Merugu