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» Graph Spectral Approach for Identifying Protein Domains
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ICCV
2003
IEEE
16 years 1 months ago
Multiclass Spectral Clustering
We propose a principled account on multiclass spectral clustering. Given a discrete clustering formulation, we first solve a relaxed continuous optimization problem by eigendecomp...
Stella X. Yu, Jianbo Shi
BMCBI
2008
95views more  BMCBI 2008»
14 years 12 months ago
Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
Background: Despite significant improvements in computational annotation of genomes, sequences of abnormal, incomplete or incorrectly predicted genes and proteins remain abundant ...
Alinda Nagy, Hédi Hegyi, Krisztina Farkas, ...
91
Voted
BMCBI
2010
139views more  BMCBI 2010»
14 years 12 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...
BMCBI
2007
139views more  BMCBI 2007»
14 years 12 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
ICDM
2007
IEEE
197views Data Mining» more  ICDM 2007»
15 years 6 months ago
Trend Motif: A Graph Mining Approach for Analysis of Dynamic Complex Networks
Complex networks have been used successfully in scientific disciplines ranging from sociology to microbiology to describe systems of interacting units. Until recently, studies of...
Ruoming Jin, Scott McCallen, Eivind Almaas