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» Graph Spectral Approach for Identifying Protein Domains
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IJCBDD
2010
127views more  IJCBDD 2010»
14 years 10 months ago
Predicting protein complexes by data integration of different types of interactions
: The explosion of highthroughput interaction data from proteomics studies gives us the opportunity to integrate Protein-Protein Interactions (PPI) from different type of interacti...
Powell Patrick Cheng Tan, Daryanaz Dargahi, Freder...
RECOMB
2009
Springer
16 years 11 days ago
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information
Abstract. Hierarchical clustering is a popular method for grouping together similar elements based on a distance measure between them. In many cases, annotation information for som...
Saket Navlakha, James Robert White, Niranjan Nagar...
LREC
2010
177views Education» more  LREC 2010»
15 years 1 months ago
Finding Domain Terms using Wikipedia
In this paper we present a new approach for obtaining the terminology of a given domain using the category and page structures of the Wikipedia in a language independent way. The ...
Jorge Vivaldi, Horacio Rodríguez
BMCBI
2006
78views more  BMCBI 2006»
14 years 11 months ago
Subfamily logos: visualization of sequence deviations at alignment positions with high information content
Background: Recognition of relevant sequence deviations can be valuable for elucidating functional differences between protein subfamilies. Interesting residues at highly conserve...
Eric Beitz
BMCBI
2008
138views more  BMCBI 2008»
14 years 12 months ago
CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions
Background: Quantitative characterization of the topological characteristics of protein-protein interaction (PPI) networks can enable the elucidation of biological functional modu...
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Mural...