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» Graph Spectral Approach for Identifying Protein Domains
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94
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BICOB
2009
Springer
15 years 4 months ago
Graph Spectral Approach for Identifying Protein Domains
Here we present a simple method based on graph spectral properties to automatically partition multi-domain proteins into individual domains. The identification of structural domain...
Hari Krishna Yalamanchili, Nita Parekh
107
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IJBRA
2008
69views more  IJBRA 2008»
14 years 9 months ago
A matrix-based multilevel approach to identify functional protein modules
: Identifying functional modules is believed to reveal most cellular processes. There have been many computational approaches to investigate the underlying biological structures [2...
Suely Oliveira, Sang-Cheol Seok
BMCBI
2007
118views more  BMCBI 2007»
14 years 9 months ago
A topological algorithm for identification of structural domains of proteins
Background: Identification of the structural domains of proteins is important for our understanding of the organizational principles and mechanisms of protein folding, and for ins...
Frank Emmert-Streib, Arcady R. Mushegian
COMPLIFE
2005
Springer
15 years 3 months ago
The Architecture of a Proteomic Network in the Yeast
Abstract. We describe an approach to clustering the yeast protein-protein interaction network in order to identify functional modules, groups of proteins forming multi-protein comp...
Emad Ramadan, Christopher Osgood, Alex Pothen
87
Voted
TIT
2010
170views Education» more  TIT 2010»
14 years 4 months ago
Belief propagation estimation of protein and domain interactions using the sum-product algorithm
We present a novel framework to estimate protein-protein (PPI) and domain-domain (DDI) interactions based on a belief propagation estimation method that efficiently computes inter...
Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale ...