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ICPP
2009
IEEE
15 years 6 months ago
Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation
We present a new parallel algorithm that extends and generalizes the traditional graph analysis metric of betweenness centrality to include additional non-shortest paths according...
Karl Jiang, David Ediger, David A. Bader
CIBCB
2007
IEEE
15 years 6 months ago
Evolving Extremal Epidemic Networks
The susceptible, infected, removed model for epidemics assumes that the population in which the epidemic takes place is well mixed. This strong assumption can be relaxed by permit...
Dan Ashlock, Fatemeh Jafargholi
WABI
2007
Springer
122views Bioinformatics» more  WABI 2007»
15 years 6 months ago
Algorithms for the Extraction of Synteny Blocks from Comparative Maps
In comparing genomic maps, it is often difficult to distinguish mapping errors and incorrectly resolved paralogies from genuine rearrangements of the genomes. A solution to this ...
Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankof...
BIBE
2005
IEEE
115views Bioinformatics» more  BIBE 2005»
15 years 5 months ago
GOMIT: A Generic and Adaptive Annotation Algorithm Based on Gene Ontology Term Distributions
We address the issue of providing highly informative annotations using information revealed by the structured vocabularies of Gene Ontology (GO). For a target, a set of candidate ...
In-Yee Lee, Jan-Ming Ho, Ming-Syan Chen
CSB
2005
IEEE
103views Bioinformatics» more  CSB 2005»
15 years 5 months ago
ECOME: A simple model for an evolving consumption web
ECOME is an interactive, graph-based model for simulating an evolving, closed consumption web. It demonstrates the fundamental behavior of a global ecosystem over evolutionary tim...
Christopher Bystroff, Sam DeLuca, Carl N. McDaniel