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MSCS
2007
91views more  MSCS 2007»
14 years 9 months ago
A rewriting calculus for cyclic higher-order term graphs
Introduced at the end of the nineties, the Rewriting Calculus (ρ-calculus, for short) is a simple calculus that fully integrates term-rewriting and λ-calculus. The rewrite rules...
Paolo Baldan, Clara Bertolissi, Horatiu Cirstea, C...
BMCBI
2002
120views more  BMCBI 2002»
14 years 9 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
BMCBI
2007
165views more  BMCBI 2007»
14 years 9 months ago
Ab initio identification of human microRNAs based on structure motifs
Background: MicroRNAs (miRNAs) are short, non-coding RNA molecules that are directly involved in post-transcriptional regulation of gene expression. The mature miRNA sequence bind...
Markus Brameier, Carsten Wiuf
ASPLOS
2009
ACM
15 years 10 months ago
Architectural support for SWAR text processing with parallel bit streams: the inductive doubling principle
Parallel bit stream algorithms exploit the SWAR (SIMD within a register) capabilities of commodity processors in high-performance text processing applications such as UTF8 to UTF-...
Robert D. Cameron, Dan Lin
PODS
2007
ACM
104views Database» more  PODS 2007»
15 years 9 months ago
XML transformation by tree-walking transducers with invisible pebbles
The pebble tree automaton and the pebble tree transducer are enhanced by additionally allowing an unbounded number of `invisible' pebbles (as opposed to the usual `visible�...
Joost Engelfriet, Hendrik Jan Hoogeboom, Bart Samw...