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MSCS
2007
91views more  MSCS 2007»
15 years 1 months ago
A rewriting calculus for cyclic higher-order term graphs
Introduced at the end of the nineties, the Rewriting Calculus (ρ-calculus, for short) is a simple calculus that fully integrates term-rewriting and λ-calculus. The rewrite rules...
Paolo Baldan, Clara Bertolissi, Horatiu Cirstea, C...
BMCBI
2002
120views more  BMCBI 2002»
15 years 1 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
BMCBI
2007
165views more  BMCBI 2007»
15 years 1 months ago
Ab initio identification of human microRNAs based on structure motifs
Background: MicroRNAs (miRNAs) are short, non-coding RNA molecules that are directly involved in post-transcriptional regulation of gene expression. The mature miRNA sequence bind...
Markus Brameier, Carsten Wiuf
216
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ASPLOS
2009
ACM
16 years 2 months ago
Architectural support for SWAR text processing with parallel bit streams: the inductive doubling principle
Parallel bit stream algorithms exploit the SWAR (SIMD within a register) capabilities of commodity processors in high-performance text processing applications such as UTF8 to UTF-...
Robert D. Cameron, Dan Lin
PODS
2007
ACM
104views Database» more  PODS 2007»
16 years 2 months ago
XML transformation by tree-walking transducers with invisible pebbles
The pebble tree automaton and the pebble tree transducer are enhanced by additionally allowing an unbounded number of `invisible' pebbles (as opposed to the usual `visible�...
Joost Engelfriet, Hendrik Jan Hoogeboom, Bart Samw...