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BMCBI
2006
159views more  BMCBI 2006»
13 years 6 months ago
MultiSeq: unifying sequence and structure data for evolutionary analysis
Background: Since the publication of the first draft of the human genome in 2000, bioinformatic data have been accumulating at an overwhelming pace. Currently, more than 3 million...
Elijah Roberts, John Eargle, Dan Wright, Zaida Lut...
PVLDB
2010
129views more  PVLDB 2010»
13 years 4 months ago
iGraph: A Framework for Comparisons of Disk-Based Graph Indexing Techniques
Graphs are of growing importance in modeling complex structures such as chemical compounds, proteins, images, and program dependence. Given a query graph Q, the subgraph isomorphi...
Wook-Shin Han, Jinsoo Lee, Minh-Duc Pham, Jeffrey ...
RECOMB
2007
Springer
14 years 6 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
CIKM
2005
Springer
13 years 11 months ago
Optimizing candidate check costs for bitmap indices
In this paper, we propose a new strategy for optimizing the placement of bin boundaries to minimize the cost of query evaluation using bitmap indices with binning. For attributes ...
Doron Rotem, Kurt Stockinger, Kesheng Wu
ALT
2004
Springer
14 years 3 months ago
On Kernels, Margins, and Low-Dimensional Mappings
Kernel functions are typically viewed as providing an implicit mapping of points into a high-dimensional space, with the ability to gain much of the power of that space without inc...
Maria-Florina Balcan, Avrim Blum, Santosh Vempala