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BMCBI
2010
118views more  BMCBI 2010»
15 years 12 hour ago
svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identifica
Background: Comparative analysis of gene expression profiling of multiple biological categories, such as different species of organisms or different kinds of tissue, promises to e...
Wensheng Zhang, Andrea Edwards, Wei Fan, Dongxiao ...
BMCBI
2007
239views more  BMCBI 2007»
15 years 9 hour ago
Pre-processing Agilent microarray data
Background: Pre-processing methods for two-sample long oligonucleotide arrays, specifically the Agilent technology, have not been extensively studied. The goal of this study is to...
Marianna Zahurak, Giovanni Parmigiani, Wayne Yu, R...
BMCBI
2006
171views more  BMCBI 2006»
14 years 12 months ago
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
Background: Intensity values measured by Affymetrix microarrays have to be both normalized, to be able to compare different microarrays by removing non-biological variation, and s...
Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M....
BMCBI
2006
125views more  BMCBI 2006»
14 years 12 months ago
Evaluating different methods of microarray data normalization
Background: With the development of DNA hybridization microarray technologies, nowadays it is possible to simultaneously assess the expression levels of thousands to tens of thous...
André Fujita, João Ricardo Sato, Leo...
APLAS
2010
ACM
14 years 11 months ago
Type Inference for Sublinear Space Functional Programming
We consider programming language aspects of algorithms that operate on data too large to fit into memory. In previous work we have introduced IntML, a functional programming langu...
Ugo Dal Lago, Ulrich Schöpp