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» HYPE Applied to the Modelling of Hybrid Biological Systems
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ICFEM
2009
Springer
15 years 6 months ago
Qualitative Action Systems
An extension to action systems is presented facilitating the modeling of continuous behavior in the discrete domain. The original action system formalism has been developed by Back...
Bernhard K. Aichernig, Harald Brandl, Willibald Kr...
DNA
2001
Springer
15 years 4 months ago
The Fidelity of the Tag-Antitag System
In the universal DNA chip method, target RNAs are mapped onto a set of DNA tags. Parallel hybridization of these tags with an indexed, complementary antitag array then provides an ...
John A. Rose, Russell J. Deaton, Masami Hagiya, Ak...
PARA
2004
Springer
15 years 5 months ago
Parallel Hybrid Sparse Solvers Through Flexible Incomplete Cholesky Preconditioning
Abstract. We consider parallel preconditioning schemes to accelerate the convergence of Conjugate Gradients (CG) for sparse linear system solution. We develop methods for construct...
Keita Teranishi, Padma Raghavan
BMCBI
2005
158views more  BMCBI 2005»
14 years 11 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
BMCBI
2006
239views more  BMCBI 2006»
14 years 12 months ago
Applying dynamic Bayesian networks to perturbed gene expression data
Background: A central goal of molecular biology is to understand the regulatory mechanisms of gene transcription and protein synthesis. Because of their solid basis in statistics,...
Norbert Dojer, Anna Gambin, Andrzej Mizera, Bartek...