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POPL
2003
ACM
16 years 5 days ago
Discovering affine equalities using random interpretation
We present a new polynomial-time randomized algorithm for discovering affine equalities involving variables in a program. The key idea of the algorithm is to execute a code fragme...
Sumit Gulwani, George C. Necula
RECOMB
2007
Springer
16 years 5 days ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
RECOMB
2004
Springer
16 years 5 days ago
Computational identification of evolutionarily conserved exons
Phylogenetic hidden Markov models (phylo-HMMs) have recently been proposed as a means for addressing a multispecies version of the ab initio gene prediction problem. These models ...
Adam C. Siepel, David Haussler
RECOMB
2004
Springer
16 years 5 days ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
STOC
2007
ACM
100views Algorithms» more  STOC 2007»
16 years 5 days ago
Reordering buffers for general metric spaces
In the reordering buffer problem, we are given an input sequence of requests for service each of which corresponds to a point in a metric space. The cost of serving the requests h...
Matthias Englert, Harald Räcke, Matthias West...