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» Hardness of Optimal Spaced Seed Design
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CPM
2005
Springer
100views Combinatorics» more  CPM 2005»
15 years 5 months ago
Hardness of Optimal Spaced Seed Design
Abstract. Speeding up approximate pattern matching is a line of research in stringology since the 80’s. Practically fast approaches belong to the class of filtration algorithms,...
François Nicolas, Eric Rivals
ICALP
2005
Springer
15 years 8 months ago
Optimal Spaced Seeds for Faster Approximate String Matching
Filtering is a standard technique for fast approximate string matching in practice. In filtering, a quick first step is used to rule out almost all positions of a text as possib...
Martin Farach-Colton, Gad M. Landau, Süleyman...
RECOMB
2004
Springer
16 years 3 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
140
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AISB
1995
Springer
15 years 6 months ago
The Ant Colony Metaphor for Searching Continuous Design Spaces
This paper describes a form of dynamical computational system--4he ant colony---and presents an ant colony model for continuous space optimisation problems. The ant colony metapho...
George Bilchev, Ian C. Parmee
GECCO
2007
Springer
189views Optimization» more  GECCO 2007»
15 years 7 months ago
A genetic algorithm with exon shuffling crossover for hard bin packing problems
A novel evolutionary approach for the bin packing problem (BPP) is presented. A simple steady-state genetic algorithm is developed that produces results comparable to other approa...
Philipp Rohlfshagen, John A. Bullinaria