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BMCBI
2010
101views more  BMCBI 2010»
14 years 9 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
SIGCOMM
2012
ACM
12 years 12 months ago
Finishing flows quickly with preemptive scheduling
Today’s data centers face extreme challenges in providing low latency. However, fair sharing, a principle commonly adopted in current congestion control protocols, is far from o...
Chi-Yao Hong, Matthew Caesar, Brighten Godfrey
SODA
2008
ACM
126views Algorithms» more  SODA 2008»
14 years 11 months ago
On distributing symmetric streaming computations
A common approach for dealing with large data sets is to stream over the input in one pass, and perform computations using sublinear resources. For truly massive data sets, howeve...
Jon Feldman, S. Muthukrishnan, Anastasios Sidiropo...
ICDE
2006
IEEE
196views Database» more  ICDE 2006»
15 years 10 months ago
Closure-Tree: An Index Structure for Graph Queries
Graphs have become popular for modeling structured data. As a result, graph queries are becoming common and graph indexing has come to play an essential role in query processing. ...
Huahai He, Ambuj K. Singh
IJCNN
2006
IEEE
15 years 3 months ago
Online Training of a Generalized Neuron with Particle Swarm Optimization
— Neural networks are used in a wide number of fields including signal and image processing, modeling and control and pattern recognition. Some of the most common type of neural ...
Raveesh Kiran, Sandhya R. Jetti, Ganesh K. Venayag...