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GCB
2010
Springer
182views Biometrics» more  GCB 2010»
14 years 8 months ago
Repeat-aware Comparative Genome Assembly
: The current high-throughput sequencing technologies produce gigabytes of data even when prokaryotic genomes are processed. In a subsequent assembly phase, the generated overlappi...
Peter Husemann, Jens Stoye
87
Voted
BMCBI
2006
115views more  BMCBI 2006»
14 years 10 months ago
Detecting recombination in evolving nucleotide sequences
Background: Genetic recombination can produce heterogeneous phylogenetic histories within a set of homologous genes. These recombination events can be obscured by subsequent resid...
Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan
86
Voted
JUCS
2007
108views more  JUCS 2007»
14 years 10 months ago
On Pipelining Sequences of Data-Dependent Loops
: Sequences of data-dependent tasks, each one traversing large data sets, exist in many applications (such as video, image and signal processing applications). Those tasks usually ...
Rui Rodrigues, João M. P. Cardoso
83
Voted
ADMA
2009
Springer
186views Data Mining» more  ADMA 2009»
15 years 4 months ago
Mining Compressed Repetitive Gapped Sequential Patterns Efficiently
Mining frequent sequential patterns from sequence databases has been a central research topic in data mining and various efficient mining sequential patterns algorithms have been p...
Yongxin Tong, Zhao Li, Dan Yu, Shilong Ma, Zhiyuan...
CP
2006
Springer
15 years 1 months ago
Revisiting the Sequence Constraint
Many combinatorial problems, such as car sequencing and rostering, feature sequence constraints, restricting the number of occurrences of certain values in every subsequence of a g...
Willem Jan van Hoeve, Gilles Pesant, Louis-Martin ...