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» Heapable Sequences and Subsequences
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64
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ICGI
2010
Springer
14 years 8 months ago
Grammatical Inference as Class Discrimination
Abstract. Grammatical inference is typically defined as the task of finding a compact representation of a language given a subset of sample sequences from that language. Many di...
Menno van Zaanen, Tanja Gaustad
NAR
2006
129views more  NAR 2006»
14 years 10 months ago
AliWABA: alignment on the web through an A-Bruijn approach
Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
Neil C. Jones, Degui Zhi, Benjamin J. Raphael
102
Voted
DM
2008
105views more  DM 2008»
14 years 10 months ago
Fibonacci numbers, alternating parity sequences and faces of the tridiagonal Birkhoff polytope
We determine the number of alternating parity sequences that are subsequences of an increasing m-tuple of integers. For this and other related counting problems we find formulas th...
C. M. da Fonseca, E. Marques De Sá
BMCBI
2006
98views more  BMCBI 2006»
14 years 10 months ago
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements
Background: Many DNA regulatory elements occur as multiple instances within a target promoter. Gibbs sampling programs for finding DNA regulatory elements de novo can be prohibiti...
Kannan Tharakaraman, Leonardo Mariño-Ram&ia...
169
Voted
ICDE
2007
IEEE
123views Database» more  ICDE 2007»
15 years 11 months ago
Stream Monitoring under the Time Warping Distance
The goal of this paper is to monitor numerical streams, and to find subsequences that are similar to a given query sequence, under the DTW (Dynamic Time Warping) distance. Applica...
Yasushi Sakurai, Christos Faloutsos, Masashi Yamam...