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BMCBI
2006
113views more  BMCBI 2006»
15 years 2 months ago
QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyp
Background: Single nucleotide polymorphisms (SNPs) are important tools in studying complex genetic traits and genome evolution. Computational strategies for SNP discovery make use...
Jifeng Tang, Ben Vosman, Roeland E. Voorrips, C. G...
BMCBI
2007
169views more  BMCBI 2007»
15 years 2 months ago
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
Background: In Archeae and Bacteria, the repeated elements called CRISPRs for "clustered regularly interspaced short palindromic repeats" are believed to participate in ...
Ibtissem Grissa, Gilles Vergnaud, Christine Pource...
BMCBI
2004
211views more  BMCBI 2004»
15 years 1 months ago
GenomeViz: visualizing microbial genomes
Background: An increasing number of microbial genomes are being sequenced and deposited in public databases. In addition, several closely related strains are also being sequenced ...
Rohit Ghai, Torsten Hain, Trinad Chakraborty
97
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AAIM
2010
Springer
181views Algorithms» more  AAIM 2010»
15 years 5 months ago
Efficient Exact and Approximate Algorithms for the Complement of Maximal Strip Recovery
Given two genomic maps G and H represented by a sequence of n gene markers, a strip (syntenic block) is a sequence of distinct markers of length at least two which appear as subseq...
Binhai Zhu
COCOA
2008
Springer
15 years 3 months ago
On Recovering Syntenic Blocks from Comparative Maps
A genomic map is represented by a sequence of gene markers, and a gene marker can appear in several different genomic maps, in either positive or negative form. A strip (syntenic b...
Zhixiang Chen, Bin Fu, Minghui Jiang, Binhai Zhu