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CORR
2010
Springer
91views Education» more  CORR 2010»
14 years 4 months ago
Switching between Hidden Markov Models using Fixed Share
In prediction with expert advice the goal is to design online prediction algorithms that achieve small regret (additional loss on the whole data) compared to a reference scheme. I...
Wouter M. Koolen, Tim van Erven
BMCBI
2010
101views more  BMCBI 2010»
14 years 10 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
BMCBI
2007
130views more  BMCBI 2007»
14 years 10 months ago
HMM-ModE - Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying e
Background: Profile Hidden Markov Models (HMM) are statistical representations of protein families derived from patterns of sequence conservation in multiple alignments and have b...
Prashant K. Srivastava, Dhwani K. Desai, Soumyadee...
AIEDU
2005
185views more  AIEDU 2005»
14 years 9 months ago
A Bayesian Student Model without Hidden Nodes and its Comparison with Item Response Theory
The Bayesian framework offers a number of techniques for inferring an individual's knowledge state from evidence of mastery of concepts or skills. A typical application where ...
Michel C. Desmarais, Xiaoming Pu
BMCBI
2010
118views more  BMCBI 2010»
14 years 10 months ago
Predicting nucleosome positioning using a duration Hidden Markov Model
Background: The nucleosome is the fundamental packing unit of DNAs in eukaryotic cells. Its detailed positioning on the genome is closely related to chromosome functions. Increasi...
Liqun Xi, Yvonne Fondufe-Mittendorf, Lei Xia, Jare...