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» Hidden semi-Markov models
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ISMB
1997
15 years 1 months ago
Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage
Protein chimerism is a phenomenon involving the combination of multiple ancestral sequences into a single, multi-domain protein through evolution. We propose a novel method for de...
Lawrence Hunter, Barry Zeeberg
NIPS
2003
15 years 1 months ago
Inferring State Sequences for Non-linear Systems with Embedded Hidden Markov Models
We describe a Markov chain method for sampling from the distribution of the hidden state sequence in a non-linear dynamical system, given a sequence of observations. This method u...
Radford M. Neal, Matthew J. Beal, Sam T. Roweis
JMLR
2010
112views more  JMLR 2010»
14 years 6 months ago
Reduced-Rank Hidden Markov Models
Hsu et al. (2009) recently proposed an efficient, accurate spectral learning algorithm for Hidden Markov Models (HMMs). In this paper we relax their assumptions and prove a tighte...
Sajid M. Siddiqi, Byron Boots, Geoffrey J. Gordon
BMCBI
2008
170views more  BMCBI 2008»
14 years 12 months ago
Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory
Background: The Baum-Welch learning procedure for Hidden Markov Models (HMMs) provides a powerful tool for tailoring HMM topologies to data for use in knowledge discovery and clus...
Alexander G. Churbanov, Stephen Winters-Hilt
AAAI
2008
15 years 2 months ago
Hidden Dynamic Probabilistic Models for Labeling Sequence Data
We propose a new discriminative framework, namely Hidden Dynamic Conditional Random Fields (HDCRFs), for building probabilistic models which can capture both internal and external...
Xiaofeng Yu, Wai Lam