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IPPS
2008
IEEE
15 years 6 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
BMCBI
2010
158views more  BMCBI 2010»
14 years 12 months ago
Validation of differential gene expression algorithms: Application comparing fold-change estimation to hypothesis testing
Background: Sustained research on the problem of determining which genes are differentially expressed on the basis of microarray data has yielded a plethora of statistical algorit...
Corey M. Yanofsky, David R. Bickel
OOPSLA
2009
Springer
15 years 6 months ago
Parallel programming with object assemblies
We present Chorus, a high-level parallel programming model suitable for irregular, heap-manipulating applications like mesh refinement and epidemic simulations, and JChorus, an i...
Roberto Lublinerman, Swarat Chaudhuri, Pavol Cern&...
ALP
1992
Springer
15 years 3 months ago
Definitional Trees
Rewriting is a computational paradigm that specifies the actions, but not the control. We introduce a hierarchical structure repreat a high level of abstraction, a form of control....
Sergio Antoy
ASAP
2010
IEEE
143views Hardware» more  ASAP 2010»
15 years 1 months ago
Loop transformations for interface-based hierarchies IN SDF graphs
Data-flow has proven to be an attractive computation model for programming digital signal processing (DSP) applications. A restricted version of data-flow, termed synchronous data...
Jonathan Piat, Shuvra S. Bhattacharyya, Mickaë...