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» Hierarchies for semantic classes
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145
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FMOODS
2008
14 years 11 months ago
Symbolic Step Encodings for Object Based Communicating State Machines
In this work, novel symbolic step encodings of the transition relation for object based communicating state machines are presented. This class of systems is tailored to capture the...
Jori Dubrovin, Tommi A. Junttila, Keijo Heljanko
107
Voted
KDD
2007
ACM
124views Data Mining» more  KDD 2007»
15 years 4 months ago
Hierarchical mixture models: a probabilistic analysis
Mixture models form one of the most widely used classes of generative models for describing structured and clustered data. In this paper we develop a new approach for the analysis...
Mark Sandler
82
Voted
BMCBI
2006
114views more  BMCBI 2006»
14 years 10 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
79
Voted
JCB
2008
90views more  JCB 2008»
14 years 10 months ago
A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast
Resolving the general organizational principles that govern the interactions during transcriptional gene regulation has great relevance for understanding disease progression, biof...
Vladimir Filkov, Nameeta Shah
96
Voted
NAR
2008
115views more  NAR 2008»
14 years 10 months ago
Data growth and its impact on the SCOP database: new developments
The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationsh...
Antonina Andreeva, Dave Howorth, John-Marc Chandon...