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TC
2010
14 years 8 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
HPCA
2011
IEEE
14 years 1 months ago
Beyond block I/O: Rethinking traditional storage primitives
Over the last twenty years the interfaces for accessing persistent storage within a computer system have remained essentially unchanged. Simply put, seek, read and write have deï¬...
Xiangyong Ouyang, David W. Nellans, Robert Wipfel,...
KDD
2006
ACM
156views Data Mining» more  KDD 2006»
15 years 10 months ago
Discovering significant OPSM subspace clusters in massive gene expression data
Order-preserving submatrixes (OPSMs) have been accepted as a biologically meaningful subspace cluster model, capturing the general tendency of gene expressions across a subset of ...
Byron J. Gao, Obi L. Griffith, Martin Ester, Steve...
ICS
2009
Tsinghua U.
15 years 4 months ago
MPI-aware compiler optimizations for improving communication-computation overlap
Several existing compiler transformations can help improve communication-computation overlap in MPI applications. However, traditional compilers treat calls to the MPI library as ...
Anthony Danalis, Lori L. Pollock, D. Martin Swany,...
POLICY
2007
Springer
15 years 4 months ago
Distributed Enforcement of Unlinkability Policies: Looking Beyond the Chinese Wall
We present a discretionary access control framework that can be used to control a principal’s ability to link information from two or more audit records and compromise a user’...
Apu Kapadia, Prasad Naldurg, Roy H. Campbell