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BMCBI
2008
211views more  BMCBI 2008»
15 years 5 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
140
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BMCBI
2006
155views more  BMCBI 2006»
15 years 5 months ago
A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
Background: Studies of differential expression that use Affymetrix GeneChip arrays are often carried out with a limited number of replicates. Reasons for this include financial co...
Anne-Mette K. Hein, Sylvia Richardson
NPL
2006
137views more  NPL 2006»
15 years 5 months ago
Minimal Structure of Self-Organizing HCMAC Neural Network Classifier
The authors previously proposed a self-organizing Hierarchical Cerebellar Model Articulation Controller (HCMAC) neural network containing a hierarchical GCMAC neural network and a ...
Chih-Ming Chen, Yung-Feng Lu, Chin-Ming Hong
JCC
2007
121views more  JCC 2007»
15 years 5 months ago
Speeding up parallel GROMACS on high-latency networks
: We investigate the parallel scaling of the GROMACS molecular dynamics code on Ethernet Beowulf clusters and what prerequisites are necessary for decent scaling even on such clust...
Carsten Kutzner, David van der Spoel, Martin Fechn...
157
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BMCBI
2004
114views more  BMCBI 2004»
15 years 5 months ago
Profiled support vector machines for antisense oligonucleotide efficacy prediction
Background: This paper presents the use of Support Vector Machines (SVMs) for prediction and analysis of antisense oligonucleotide (AO) efficacy. The collected database comprises ...
Gustavo Camps-Valls, Alistair M. Chalk, Antonio J....
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