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ICCS
2001
Springer
15 years 8 months ago
Computational Design and Performance of the Fast Ocean Atmosphere Model, Version One
The Fast Ocean Atmosphere Model (FOAM) is a climate system model intended for application to climate science questions that require long simulations. FOAM is a distributed-memory p...
Robert L. Jacob, Chad Schafer, Ian T. Foster, Mich...
IPPS
2005
IEEE
15 years 10 months ago
High-Performance Direct Pairwise Comparison of Large Genomic Sequences
Many applications in Comparative Genomics lend themselves to implementations that take advantage of common high-performance features in modern microprocessors. However, the common...
Christopher Mueller, Mehmet M. Dalkilic, Andrew Lu...
EUROPAR
2005
Springer
15 years 10 months ago
PerfMiner: Cluster-Wide Collection, Storage and Presentation of Application Level Hardware Performance Data
Abstract. We present PerfMiner, a system for the transparent collection, storage and presentation of thread-level hardware performance data across an entire cluster. Every sub-proc...
Philip Mucci, Daniel Ahlin, Johan Danielsson, Per ...
ICPPW
2009
IEEE
15 years 2 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
ICPPW
2006
IEEE
15 years 10 months ago
Multiple Flows of Control in Migratable Parallel Programs
Many important parallel applications require multiple flows of control to run on a single processor. In this paper, we present a study of four flow-of-control mechanisms: proces...
Gengbin Zheng, Laxmikant V. Kalé, Orion Sky...