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» High performance computing through parallel processing
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128
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BMCBI
2008
121views more  BMCBI 2008»
15 years 3 months ago
ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...
117
Voted
SC
2004
ACM
15 years 9 months ago
Analysis and Performance Results of a Molecular Modeling Application on Merrimac
The Merrimac supercomputer uses stream processors and a highradix network to achieve high performance at low cost and low power. The stream architecture matches the capabilities o...
Mattan Erez, Jung Ho Ahn, Ankit Garg, William J. D...
110
Voted
SPAA
2009
ACM
16 years 4 months ago
Beyond nested parallelism: tight bounds on work-stealing overheads for parallel futures
Work stealing is a popular method of scheduling fine-grained parallel tasks. The performance of work stealing has been extensively studied, both theoretically and empirically, but...
Daniel Spoonhower, Guy E. Blelloch, Phillip B. Gib...
134
Voted
IPPS
2006
IEEE
15 years 9 months ago
Similarity-aware query processing in sensor networks
We assume a sensor network with data-centric storage, where sensor data is stored within the sensor network and ad hoc queries are disseminated and processed inside the network. I...
Ping Xia, Panos K. Chrysanthis, Alexandros Labrini...
117
Voted
HPCC
2007
Springer
15 years 9 months ago
Speculative Parallelization - Eliminating the Overhead of Failure
Existing runtime parallelization techniques impose severe performance penalties when a speculative parallelization is attempted and fails. Some techniques require a sequential rest...
Mikel Luján, Phyllis Gustafson, Michael Pal...