Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
ZPL is a parallel array language designed for high performance scientific and engineering computations. Unlike other parallel languages, ZPL is founded on a machine he CTA) that a...
Bradford L. Chamberlain, Sung-Eun Choi, E. Christo...
Supercomputer performance is highly dependent on its interconnection subsystem design. In this paper we study how di erent architectural approaches for router design impact into s...
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
SMP Click is a software router that provides both flexibility and high performance on stock multiprocessor PC hardware. It achieves high performance using device, buffer, and queu...