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» High performance computing through parallel processing
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2009
ACM
15 years 10 months ago
Highly scalable genome assembly on campus grids
Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
HIPS
1998
IEEE
15 years 8 months ago
ZPL's WYSIWYG Performance Model
ZPL is a parallel array language designed for high performance scientific and engineering computations. Unlike other parallel languages, ZPL is founded on a machine he CTA) that a...
Bradford L. Chamberlain, Sung-Eun Choi, E. Christo...
ICS
1999
Tsinghua U.
15 years 8 months ago
Low-level router design and its impact on supercomputer system performance
Supercomputer performance is highly dependent on its interconnection subsystem design. In this paper we study how di erent architectural approaches for router design impact into s...
Valentin Puente, José A. Gregorio, Cruz Izu...
ISHPC
2003
Springer
15 years 9 months ago
Performance Study of a Whole Genome Comparison Tool on a Hyper-Threading Multiprocessor
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
USENIX
2001
15 years 5 months ago
Flexible Control of Parallelism in a Multiprocessor PC Router
SMP Click is a software router that provides both flexibility and high performance on stock multiprocessor PC hardware. It achieves high performance using device, buffer, and queu...
Benjie Chen, Robert Morris